Re: [PyMOL] Missing residues in PDB

[Thomas H. <sp...@us...>]

Hi Andrey,

I have a script that updates the sequence based on residue numbering 
(resi). See attachment.

Usage: set_sequence sequence [, selection [, start ]]

Example:

# import script
run setseq.py

# create a poly-ala peptide
fab AAAAAAAAA, myobj

# set new sequence
set_sequence CDEFGHIKL, myobj

# update sequence viewer
rebuild

Cheers,
   Thomas

On 01/30/2012 01:38 PM, gontchar andrey wrote:
> Hi.
> We have a pdb-file of a small sequence of aminoacids. In this file there are atom names, atom coordinates, connects etc. except residue names records. Sure we can try to write them manually, but I'd like to know if there is some tool to do this automatically?
>
> --
>
> Andrey

-- 
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen