[PyMOL] H-bonds representation

[James S. <jms...@gm...>]

Dear PyMol users!



As I've understood there are no posible ways to represent H-bonds in
proteins in explicit manner. So I'm looking for possible way to do it via
some plugin or another way.

In particular I need
1) to visualize H-bonds in some structural motifs like coiled coil wich are
dimers of alpha helices  ( so I'd like to see H-bonds beetwen separate
alpha helices )

2) to visualize H-bonds in spicified SS structure ( e.g during formation of
the alpha helices)- so I'd like to see H-bonds beetwen amide and Carboxy
groups in specified amino acid sequence.

3) Finally I'd like to check H-bond in protein-ligand complex ( beetwenn
specified ligand groups as well as some amino acid residues of the ligand
binding pocket)


Thanks,

James