Re: [PyMOL] measuring helix angle

[Thomas H. <sp...@us...>]

Hi Hena,

you don't need to edit the script. If you paste the script to a file 
named script.py, then you can continue by typing into the PyMOL command 
line:

run script.py
angle_between_helices chain A and resi 6-20, chain A and resi 26-39

Cheers,
   Thomas

Hena Dutta wrote, On 11/22/11 20:50:
> Hi,
> 
> Can anyone guide me how to use the pymol script to calculate the angle 
> between two helices?
> Where and how to edit the script? I have 2 helices in a pdb file as follows:
> 
> protein.pdb
> hel1 is chain A: 6-20
> hel2 is chain A: 26-39
> 
> Thanking you in advance...
> Hena

-- 
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen