Re: [PyMOL] electron density map

[Troels E. L. <tl...@gm...>]

Have you tried this:

load run02-Protein-ANP-BA_ligands_omitmap.map.ccp4, fofc-map
isomesh +fofc_all, fofc-map, 3 , within_Ba , carve=1.5
isomesh -fofc_all, fofc-map, -3 , within_Ba , carve=1.5
color green, +fofc_all
color red, -fofc_all
set mesh_width=0.75, +fofc_all
set mesh_width=0.75, -fofc_all


2011/8/24 Jason Vertrees <jas...@sc...>

> Hi Claudia,
>
> We can't yet copy/extend maps. For the time being, you need to use
> symmetry expansion on your molecule to get them into the density. See,
>
> * -- http://www.pymolwiki.org/index.php/Symexp
> * -- http://www.pymolwiki.org/index.php/Supercell
>
> Cheers,
>
> -- Jason
>
> On Wed, Aug 24, 2011 at 3:57 PM, DelCampo, Claudia
> <Cla...@um...> wrote:
> >
> > Hello,
> >
> > I am trying to display a ccp4 map together with my protein model in
> Pymol. I followed the directions given in Pymol-wiki: "display ccp4 maps"
> and I get to see the map but it is not superimposed with the protein
> structure. How can i get the map to be positioned correctly?
> >
> > Thanks for your help!
> >
> > Post-doc
> > Lambright Lab
> > Program in Molecular Medicine
> > Biotech Two - UMMS
> > Phone:508-856-1087
> >
> >
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>
>
> --
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrodinger, LLC
>
> (e) Jas...@sc...
> (o) +1 (603) 374-7120
>
>
> ------------------------------------------------------------------------------
> EMC VNX: the world's simplest storage, starting under $10K
> The only unified storage solution that offers unified management
> Up to 160% more powerful than alternatives and 25% more efficient.
> Guaranteed. http://p.sf.net/sfu/emc-vnx-dev2dev
> _______________________________________________
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