[PyMOL] Help

[Babban M. <bab...@gm...>]

Dear users,

Is there some program to calculate the zeta potential or streaming
potential
of protein molecules (PDB files )

Is there some program to calculate the dipole moment of protein molecules
at
different PH values?


My last doubt is about creating polymers out a given PDB ?
I am studying the fibrils of some proteins and although the structure of
fibril is not know but through some analysis I have come to understand the
region in peptide which is leading to fibrillation.

I want to be able to create a PDB which has like 4/8/16 monomeric peptide
combined through some BETA PLEATED region(i.e the peptides will
join/aggregate around that region (beta region) of the peptide ) and all I
have is the PDB of the monomeric peptide.

Is there a possibility to make such peptides in Pymol or something ? Please
advise.


Thanks for your help.

Sincerely