Re: [PyMOL] SURFACE MODEL

[Folmer F. <fo...@gm...>]

Dear Spyros,

Do you know about the PyMOL wiki (http://pymolwiki.org/)?

Take a look here: http://pymolwiki.org/index.php/Color
for an explanation about colors.
In the default representation
Green: Carbon
Blue: Nitrogen
Red: Oxygen
Yellow: sulfur

For coloring eg.
>color gray
will color everything gray. This is done on the command-line.
You can also use the gui (top right there is a multicolored square
with the letter C, for color) and select many different colors. This
can be done for "all" or individually for each object/pdb you load.

Hope this helps!

Best regards,
Folmer Fredslund

2011/7/17 Spyros Charonis <s.c...@gm...>:
> Hello PyMOLers,
> A quick question on the surface model, is there anywhere where I can learn
> how molecules are color-coded. The default scheme has green, red, and bits
> of yellow (I know the accessible to solvents surface is what is shown, but
> I'm not sure what red, green, and yellow bits mean)? Also, is there a way I
> can turn the whole thing gray (monochrome) so that I can color in parts I
> want to examine with my own coloring method?
> Spyros
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