Re: [PyMOL] Downloading the biological assembly from the PDB

[Martin H. <ma...@bl...>]

Dear all
thanks for the support, this is most helpfull.

Kind regards
Martin






Am 04.05.11 09:38, schrieb Hongbo Zhu:
> Yes, great trick:
>
> fetch 1avd, type=pdb1
>
> On 05/03/2011 10:22 PM, li...@co... wrote:
>> http://www.rcsb.org/pdb/files/1avd.pdb1
>>
>> The key is adding 1 to the suffix.  Sometimes there is more than one biological unit, in which case, there is a pdb2, pdb3, etc.
>>
>> -David
>>
>> On May 3, 2011, at 4:00 PM, Martin Hediger<ma...@bl...>   wrote:
>>
>>> Dear all
>>> I would like to ask how it is possible to download the coordinate file
>>> for the biological assembly of a protein structure from the PDB.
>>> Naturally, this is not a question directly related to PyMOL, but I
>>> thought I'll be reaching at least a couple of
>>> Biochemists/Chrystallographers who know how to do this.
>>> As an example, when downloading the PDB file of "1AVD", I get a file
>>> with two chains. The biological assembly would be a tetramer, so I
>>> wonder what URL I would require to write into a script that does the
>>> downloading.
>>>
>>> Thanks for help on this.
>>> Martin
>>>
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