Re: [PyMOL] pymol autodock plugins

[Donnie B. <dbe...@ge...>]

On 21:37 Thu 28 Apr     , lina wrote:
> Error: 1
> <type 'exceptions.IndexError'> Exception in Tk callback
>   Function: <bound method Autodock.generate_receptor of
> <pmg_tk.startup.autodock.Autodock instance at 0x2c31758>> (type: <type
> 'instancemethod'>)
>   Args: ()
> Traceback (innermost last):
>   File "/usr/lib/python2.6/dist-packages/Pmw/Pmw_1_3/lib/PmwBase.py",
> line 1747, in __call__
>     return apply(self.func, args)
>   File "/usr/local/lib/python2.6/dist-packages/pmg_tk/startup/autodock.py",
> line 1898, in generate_receptor
>     tmp_rec_pdb = os.path.join(self.work_dir(),"receptor.%s.pdb" % sel[0])
> <type 'exceptions.IndexError'>: tuple index out of range
> 
> There is also something like
> Batch: prepare_receptor4.py -r /cwd/receptor_1.pdb -o
> /cwd/receptor..pdbqt -A checkhydrogens
> sh: prepare_receptor4.py: not found

Make sure you've provided the correct path to prepare_receptor4.py and 
also make sure the file has executable permissions.

-- 
Thanks,
Donnie

Donald S. Berkholz, Ph.D.
Research Fellow
James R. Thompson lab, Physiology & Biomedical Engineering
Grazia Isaya lab, Pediatric & Adolescent Medicine
Medical Sciences 2-66
Mayo Clinic College of Medicine
200 First Street SW
Rochester, MN 55905
office: 507-538-6924
cell: 612-991-1321