Re: [PyMOL] pymol autodock plugins

[lina <lin...@gm...>]

Thanks for your answering.

I will try.



On Sat, Apr 30, 2011 at 3:43 AM, Harry Jubb <hj...@ca...> wrote:
> There is also something like
> Batch: prepare_receptor4.py -r /cwd/receptor_1.pdb -o
> /cwd/receptor..pdbqt -A checkhydrogens
> sh: prepare_receptor4.py: not found
>
> Dear Lina,
> I also encountered this error when using the Autodock 4 plugin. I believe
> that there is a bug in the script for adding hydrogens; my solution for some
> structures was to use a different program to add hydrogens (I did this using
> TRITON http://ncbr.chemi.muni.cz/triton/). Also, if I remember correctly, it
> is best to ensure there are no underscores in your PDB filenames or
> selections.
> I hope that is of some help,
> Best,
> Harry
> -----------------------------------
> Harry Jubb
> Part II Biochemistry
> Homerton College



-- 
Best Regards,

lina