From: Hongbo Z. <ho...@bi...> - 2011-03-21 21:57:35
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Dear PyMOLers, As many of you might be aware of, MSMS is an excellent program developed by Michel Sanner for computing protein surface, especially solvent excluded surface (SES). (see http://mgltools.scripps.edu/packages/MSMS/ ). Due to its outstanding usability, Robert Campbell had already provided several very helpful PyMOL scripts about MSMS (see http://pldserver1.biochem.queensu.ca/~rlc/work/pymol/ ). I have also been using the MSMS program heavily in my work and developed a MSMS plugin for PyMOL with a graphical user interface (GUI). If you have interest, please take a look at the plugin at: --------------------------------------------------- http://www.pymolwiki.org/index.php/MSMS --------------------------------------------------- Features: MSMS can be configured and invoked in the GUI. The triangulated protein SES can be rendered as mesh or/and vertices plus normal vectors. The color of surface mesh or vertices can also be configured. Your feedback and suggestions are particularly welcome! Best regards, Hongbo |