Re: [PyMOL] distance between two atoms in all the pdb files in a directory

[Tsjerk W. <ts...@gm...>]

Hi pkb bioinfo (which I do hope is not your real name),

Did you actually paste the script or did you retype it?

> from pymol import cmd
> from glob import glob
>
> lst = glob("*.pdb")
> lst.sort()
>
> for fil in lst:
>         cmd.load(fil,"tmp")
>         dst=cmd.distance('/tmp//A/LYS`203/NZ','/tmp//A/GLU`145/OE2')
>         print lst

You set dst to be the distance, and then you print lst...

Cheers,

Tsjerk

-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623