Re: [PyMOL] Coloring frames via spectrum

[Warren D. <wa...@de...>]

Yes, although it is limited to uniform representational coloring:

fetch 1nmr

set all_states

# the object has 20 states, so we can set separate line colors
# for each state as follows:

for a in range(1,21): cmd.set("line_color","auto","1nmr",a) 

# same goes for cartoon_color, etc.

Perhaps a better approach would be:

# start over

dele all

fetch 1nmr

# break apart the object by state

split_states 1nmr

# delete the original

dele 1nmr

# and color by object (carbons only)

util.color_objs("elem c")

# (all atoms)

util.color_objs("all")

Cheers,
Warren

> -----Original Message-----
> From: Jochen Hub [mailto:jh...@gw...]
> Sent: Tuesday, January 06, 2009 12:30 PM
> To: pym...@li...
> Subject: [PyMOL] Coloring frames via spectrum
> 
> Hi everyone,
> 
> I have a set of 30 frames and I use "set show_all,1" to display them
> all. Now I want to visualize all frames by giving the protein in each
> frame a different color. If possible, I would like to use the spectrum
> command for that since it provides all the pre-defined color
gradients.
> 
> Is there a way do that?
> 
> Thanks a lot,
> Jochen
> 
>
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