Re: [PyMOL] Sequence alignment editing

[Jason V. <jav...@ut...>]

Dimitry,

Try the following:

set seq_view, on
super mol1, mol2, object=alignment

This shows CGO lines between the paired atoms on the structures, and
also aligns the sequences (where the grey letters are non-matching).

HTH,

-- Jason

> Message: 8
> Date: Fri, 22 Aug 2008 14:40:19 +0400
> From: DimitryASuplatov <ge...@gm...>
> Subject: Re: [PyMOL] Sequence alignment editing
> To: pym...@li...
> Message-ID: <121...@le...>
> Content-Type: text/plain
> 
> Hello,
> I have two structures of related organisms. I want to align them in 3D
> with pymol and be able to view their sequences aligned as well
> (corresponding to structure alignment). Right now when using
> Display->Sequence mode sequences are displayed simply 'as is' even after
> 3D 'align' command. Could something be done? Thanks.
> Thanks!
> SDA.

-- 

Jason Vertrees, PhD

Dartmouth College : jv...@cs...
Boston University : ja...@bu...

PyMOLWiki : http://www.pymolwiki.org/