Re: [PyMOL] load cgo into existing pymol session

[Tsjerk W. <ts...@gm...>]

Hi Hari,

You can do it using:

execfile("/Users/hari/Desktop/test.cgo")
cmd.load_cgo(obj,"test")

However, you might find it more convenient to drop the "obj =" from
the .cgo file and load the thing with:

cmd.load_cgo( eval( open("/Users/hari/Desktop/test.cgo").read() ), "test" )

Although that seems a bit more complicated, it's in fact quite easy to
define as a function itself. Hmm, I think I'm gonna store my CGO
objects just like that myself :)

Hope it helps,

Tsjerk


On Thu, Feb 21, 2008 at 10:16 PM, hari jayaram <ha...@gm...> wrote:
> Hi I have a running pymol session with nothing loaded.
> I now want to load a cgo object into this session.
> When I read in the cgo file using either command line (load
> /Users/hari/Desktop/test.cgo  , test ) or the GUI menu , I get an object
> entry on the side panel but nothing shows up in the viewing window.
>
> I can successfully load any cgo file using  a python script .  I want to
> learn how to "inject" a cgo object like the one given below into a running
> python session .
> Can someone tell me how to do this.
>
> Your help is greatly appreciated
> Thank You
> Hari Jayaram
> Brandeis University
>
> #Contents of test.cgo file
>
> obj = [
>
>    BEGIN, LINES,
>
>    COLOR, 1.0, 1.0, 1.0,
>
>
>
>
>    VERTEX, 0.0, 0.0, 0.0,
>
>    VERTEX, 1.0, 0.0, 0.0,
>
>
>
>
>    VERTEX, 0.0, 0.0, 0.0,
>
>    VERTEX, 0.0, 2.0, 0.0,
>
>
>
>
>    VERTEX, 0.0, 0.0, 0.0,
>
>    VERTEX, 00, 0.0, 3.0,
>
>
>
>
>    END]
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623