Re: [PyMOL] problem to open a pdb or mol2 file

[YOSHIMURA, T. <ta...@ka...>]

Hi Alain,

I think this problem is raised because you try to open the file,
whose path includes non-us-ascii charactors.

Pymol (and many other programs) doesn't recognize "multilingual" path,
so when you specify the file under such folder, pymol will return some errors.

To resolve this error, copy the file to the root directory of C:\ etc.,
and try to open it again.

If you'd like to open the file without copying, go to 'Start' menu and
select 'Run' command, enter the command:
x:\path\to\pymol\pymol.exe "x:\path\to\the\file.pdb"

It's important to enclose the file path/name in double-quotes.


> dear users,
> 
> Since recently, I've got an error message when I try to 'open' a pdb (or
> mol2) from the pymol tcl/tk GUI File/Open menu.
> No problem when I open directly from the file (doble-clic)
> 
> Thanks
> 
> 
> Alain
> 
> ==========
> Error: 1
> CmdException Exception in Tk callback
>   Function: <bound method Normal.file_open of <pmg_tk.skins.normal.Normal
> instance at 0x04A9A8A0>> (type: <type 'instancemethod'>)
>   Args: ()
> Traceback (innermost last):
>   File "C:\Program Files\DeLano
> Scientific\PyMOL/modules\Pmw\Pmw_1_2\lib\PmwBase.py", line 1747, in
> __call__
>     return apply(self.func, args)
>   File "C:\Program Files\DeLano
> Scientific\PyMOL/modules\pmg_tk\skins\normal\__init__.py", line 438, in
> file_open
>     self.cmd.load(ofile,quiet=0)
>   File "C:\Program Files\DeLano
> Scientific\PyMOL/modules\pymol\importing.py", line 585, in load
>     if _raising(r): raise pymol.CmdException
> CmdException: <pymol.CmdException instance at 0x031E51C0>



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YOSHIMURA, Takuya
Dept. of Applied Life Sceinces,
Facl. of Agriculture, Kyoto University.

Mail: ta...@ka...