Re: [PyMOL] Sticks and distances with individual transparencies - repost

[DeLano S. <de...@de...>]

Mark,
 
Your confusion arises from the new "set_bond" command, which must be used
when setting bond-specific properties.  Please see the official docs on
"set_bond".
 
Cheers,
Warren
 
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  _____  

From: pym...@li...
[mailto:pym...@li...] On Behalf Of Dr. Mark
Mayer
Sent: Tuesday, June 26, 2007 10:18 AM
To: pym...@li...
Subject: [PyMOL] Sticks and distances with individual transparencies -
repost


Apologies for prior post message font was nearly unreadable


Dear All,


I'm trying to write a Pymol script with which produces a mixture of both
solid and transparent sticks
I'm using the current 1.0 incentive release of MacPymol. After drawing all
my sticks I issue following commands, but nothing changes although the log
output suggests the change is being set.


PyMOL>set stick_transparency=0.2, /sca//A/228  and !mc
Setting: stick_transparency set for 5 atoms in object "mol1".

I'd also like to draw selected H-bonds with control of transparency
with the rest solid, but have no idea how to do this.

--
Mark Mayer Ph.D.
LCMN NICHD NIH DHHS
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