Re: [PyMOL] How to see all models in PDB file?

[Gianluca S. <gia...@ch...>]

On Wednesday 06 June 2007  Kristoffer Torbj=F8rn B=E6k wrote:
> Hi everyone,
>
> I have a PDB file containing the coordinates for six monomers together
> forming a hexamer. Each monomer is separated by MODEL/ENDMDL in the PDB
> file, but when I load the file in PyMOL  I only see one of the monomers.
> What do I have to do in order to see the whole hexamer?
=46rom The PDB File Format - Contents Guide
The MODEL record specifies the model serial number when multiple structures=
=20
are presented in a single coordinate entry, as is often the case with=20
structures determined by NMR.

IMHO you should set different "chainID" identifiers on the 22nd column of t=
he=20
PDB file for each monomer to identify different monomers within the same=20
complex.
MODEL is more suitable to identify different 'states' of a trajectory or a=
=20
pool of NMR structures.

Regards,
Gianluca

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Gianluca Santarossa
Institute for Chemical and Bioengineering
Department of Chemistry and Applied Biosciences
ETH Zurich, H=F6nggerberg, HCI, 8093 Zurich

Phone: +41 44 633 4232
E-Mail: gia...@ch...
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