Re: [PyMOL] (no subject)

[Tsjerk W. <ts...@gm...>]

Dear Bernhard,

The user manual is quite informative where it comes to making
selections. There is not a polar/nonpolar grouping made for you, but
you can easily select the residues based on their names (resn or r.).

select basic, (resn lys,his,arg)

As a side note, on this as well as all other user lists, it is
preferred that you set a subject line which reflects the question
you're asking. Since many of us are dedicating our own time to
answering, we usually make a preselection of the mails we could
possibly provide an answer to. Mails without subject are likely to be
thrown away unread.

Cheers,

Tsjerk


On 2/23/07, Bernhard Kleine <bb...@gm...> wrote:
> Hello and good morning,
>
> being newly arrived in this list, I am a molecular biologist working
> recently in endocrinology and epigenetics and living in the black forest
> in the south west of germany.
>
> Since I am not fully content with the picture quality which I can get
> with Rasmol, I am trying to use PyMOL. However, since I try to adopt my
> rasmol script for use in PyMOL, I am unable to find how to select
> individual amino acids, or e.g. polar or basic residues. I am quite
> convinced that such shortcuts exist. But either the refmanual oder the
> usermanual lack mentioning any typ of aminoacids, so far as I can say
> (searching with Acrobat reader).
>
> It would be a pleasure if anyone could point me to the proper
> information.
>
> Thanks a lot
>
> Bernhard
> --
> Bernhard Kleine
> mail bb...@gm...
> linux-user Nr. 411598
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623