Re: [PyMOL] Persistent PyMOL pipes? Preventing a call to 'cmd.quit()'.

[Edward d'A. <tru...@gm...>]

Thank you.  That option kept the PyMOL pipe alive.  As the option is
stored in the structure 'options.keep_thread_alive', would this '-K'
option cause a different behaviour of the program or is the program
simply run as a parent thread and this option keeps the parent alive?

Cheers,

Edward


On 10/30/06, DeLano Scientific <de...@de...> wrote:
> Edward,
>
> Add a "K" keepalive option along with the -p:
>
> pymol -pK
>
> Cheers,
>
> DeLano Scientific LLC
> Email Support Services
>
> > -----Original Message-----
> > From: pym...@li...
> > [mailto:pym...@li...] On Behalf
> > Of Edward d'Auvergne
> > Sent: Sunday, October 29, 2006 9:01 PM
> > To: pym...@li...
> > Subject: [PyMOL] Persistent PyMOL pipes? Preventing a call to
> > 'cmd.quit()'.
> >
> > Hi,
> >
> > I am the project administrator for the open source program
> > relax (http://nmr-relax.com or
> > https://gna.org/projects/relax) and am interested in
> > interfacing relax with PyMOL.  relax is a program for
> > studying the dynamics of proteins, RNA, or other organic
> > molecules through the analysis of NMR relaxation data and I
> > would like to display the dynamics results superimposed onto
> > molecular structures within PyMOL.  I have attempted to open
> > a PyMOL pipe using the '-p'
> > flag however, when relax finishes and closes the pipe, PyMOL
> > terminates printing the message:
> >
> >   PyMOL: normal program termination.
> >
> > Is there a simple way to keep the PyMOL binary running after
> > a script terminates?  I've searched through the sources but a
> > solution isn't immediately obvious.  I've tracked back from
> > the file 'layer5/main.c'
> > where the 'printf()' statement is located back to the
> > function 'CmdQuit' in the file 'layer4/Cmd.c', but can't find
> > what is calling the 'cmd.quit()' method.
> >
> > Thanks,
> >
> > Edward
> >
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