Re: [PyMOL] cartoon representation error

[Tsjerk W. <ts...@gm...>]

Hi Eva,

It may be that the secondary structure information is not set
(assuming that you have some secondary structure). You can try to run
'dss' or if that fails you can try to resort to 'util.ss' which may do
the trick. Alternatively, you can set the secondary structure
information manually, using 'alter selection,ss=X', where X can be any
of l(oop), s(heet) or h(elix).

Hope it helps,

Tsjerk

On 10/23/06, Eva Vanamee <eva...@ms...> wrote:
> Hi,
> Once in a while when I try to display a chain or segment of a molecule
> in cartoon representation, it shows up as ribbon.
> What might be the problem and is there a fix?
> Thanks in advance,
> - Eva
>
>
>
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-- 
Tsjerk A. Wassenaar, Ph.D.
Groningen Biomolecular Sciences and Biotechnology Institute (GBB)
Dept. of Biophysical Chemistry
University of Groningen
Nijenborgh 4
9747AG Groningen, The Netherlands
+31 50 363 4336