Re: [PyMOL] how to add acetyl group nto peptide by pymol

[Joel T. <joe...@ot...>]

You can use the builder functionality to add a carbonyl and then  a 
methyl to your lysine amine terminus. Unfortuantely you cannot optimize 
in Pymol. You could use Prodrug or CNS if you have some experience.

Cheers

Joel

LIU Changdong wrote:
> Hi,evreyone:
>  I've got a pdb file of short peptide (11aa),I want to add an acetyl group
> on Lys residue and optimize the structure.Is there anyone who can tell me
> how to do it?
>
> Best
> Dong
>
>
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-- 
Joel Tyndall, PhD

Lecturer
National School of Pharmacy
University of Otago
PO Box 913 Dunedin 9054
New Zealand                     

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