Re: [PyMOL] How do you show the coordinates of an atom?

[Scott P B. <sco...@ab...>]

That's not a very helpful response, as it may not be clear how one maps an 
atom selection in Pymol to the corresponding line in a PDB file.

To print out the coordinates within Pymol, you need to use the command 
iterate_state, e.g.:

iterate_state 1, <selection_name>, print x,y,z

Where <selection_name> is the name of the object for the atom(s) you've 
selected, and x, y, &z are the coordinates of the atom(s).

Scott

-- 
Scott P Brown, PhD
Senior R&D Computational Scientist
Abbott Laboratories
Dept R42T / Bldg AP10-LL
100 Abbott Park Rd
Abbott Park, IL 60064-6115





"D. Joe Anderson" <de...@ia...> 
Sent by: pym...@li...
07/06/2006 09:10 AM

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Re: [PyMOL] How do you show the coordinates of an atom?






On Wed, Jul 05, 2006 at 04:33:16PM -0400, John Anderson wrote:

> or are the coordinates in the pdb file?

They are, yes.

-- 
D. Joe