From: Geng T. <gen...@ho...> - 2006-04-15 05:18:29
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Sorry, wrong thread. This should be my answer to laura's question about different sphere size. Too excited to be of a little help here. Tiger >From: "Geng Tian" <gen...@ho...> >To: pm...@ua... >CC: pym...@li... >Subject: RE: [PyMOL] saving files in pymol >Date: Sat, 15 Apr 2006 05:08:57 +0000 > >Hi, Paulo: >I hope these entries from my old pml file might help you: > >select c11, resi 11 and chain c >show sphere, c11 >alter c11, vdw=vdw*0.2 > >select c124, resi 124 and chain c >show sphere, c124 >alter c124, vdw=vdw*2 > >Tiger > > > > > > > >>From: Paulo Martel <pm...@ua...> >>CC: pym...@li... >>Subject: [PyMOL] saving files in pymol >>Date: Sat, 15 Apr 2006 02:40:39 +0100 >> >> >>Hello, >> >>one thing I find a little bit annoying: the "save" command in Pymol will >>accept any of <file>.<ext>, and if the <ext> is unknown, >>it will simple save a pdb file. While some people may find this a useful >>feature, I think it is quite dangerous. For instance, suppose >>I'm trying to save "work.pse" and mistakenly type "work.psf", without >>noticing it. If I close Pymol, I will end up with a pdb file >>called "work.psf", and all my session work goes down the drain. This is >>not an hypothetical situation, it happened a couple of times, to >>my great dismay. What do you think, Warren ?... >> >>Regards, >>Paulo >> >> >> >>------------------------------------------------------- >>This SF.Net email is sponsored by xPML, a groundbreaking scripting >>language >>that extends applications into web and mobile media. Attend the live >>webcast >>and join the prime developer group breaking into this new coding >>territory! >>http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642 >>_______________________________________________ >>PyMOL-users mailing list >>PyM...@li... >>https://lists.sourceforge.net/lists/listinfo/pymol-users > >_________________________________________________________________ >Express yourself instantly with MSN Messenger! Download today - it's FREE! >http://messenger.msn.click-url.com/go/onm00200471ave/direct/01/ > > > >------------------------------------------------------- >This SF.Net email is sponsored by xPML, a groundbreaking scripting language >that extends applications into web and mobile media. Attend the live >webcast >and join the prime developer group breaking into this new coding territory! >http://sel.as-us.falkag.net/sel?cmd=lnk&kid=110944&bid=241720&dat=121642 >_______________________________________________ >PyMOL-users mailing list >PyM...@li... >https://lists.sourceforge.net/lists/listinfo/pymol-users _________________________________________________________________ Express yourself instantly with MSN Messenger! Download today - it's FREE! http://messenger.msn.click-url.com/go/onm00200471ave/direct/01/ |