[PyMOL] RE: [ccp4bb]: off-topic: labelling stereo with PyMOL

[Warren D. <wa...@de...>]

Isabel,

There is a PyMOL-Users mailing list for such questions at =
<http://lists.sourceforge.net/lists/listinfo/pymol-users>

As for making stereo labels, the latest PyMOL release 0.99rc6 =
<http://delsci.com/rel/099> has variable-size, stereo 3D labels that can =
be positioning using the mouse (when in editing mode).

there are 9 different scalable fonts:

   set label_font_id, number

where number is 5 through 14.

The font size can be adjusted

   set label_size, number

where number is the point size (or -number for Angstroms)

The color can be edited

   set label_color, color-name

And to set labels:

   label selection, expression
 =20
e.g.

  label all, name
  label resi 10 , b

or

   label 15/CA, "A Custom Label"

To position labels:

   edit_mode

then ctrl-middle-click-and-drag to position the label in space.

   stereo walleye

and

   ray

to generate a ray-traced stereo pair for publication.

Cheers,
Warren

--
Warren L. DeLano, Ph.D.                    =20
Principal Scientist

. DeLano Scientific LLC =20
. 400 Oyster Point Blvd., Suite 213          =20
. South San Francisco, CA 94080 USA  =20
. Biz:(650)-872-0942  Tech:(650)-872-0834    =20
. Fax:(650)-872-0273  Cell:(650)-346-1154
. mailto:wa...@de...     =20
=20

> -----Original Message-----
> From: own...@dl... [mailto:own...@dl...] On=20
> Behalf Of Isabel Garcia-Saez
> Sent: Wednesday, March 15, 2006 9:11 AM
> To: cc...@dl...
> Subject: [ccp4bb]: off-topic: labelling stereo with PyMOL
>=20
> ***  For details on how to be removed from this list visit the  ***
> ***          CCP4 home page http://www.ccp4.ac.uk         ***
>=20
>=20
> Hi everyone:
> Sorry for the off-topic subject.
> My problem: I need stereo labels in an stereo figure=20
> generated with PyMOL.
> My question: Is there a way to do that in PyMOL?
>=20
> Thanks,
>=20
> Isabel
>=20
>=20
>=20
> Isabel Garcia-Saez     PhD
> Institut de Biologie Structurale Jean-Pierre Ebel Laboratoire=20
> de Moteurs Mol=E9culaires 41, rue Jules Horowitz
> F-38027 Grenoble CEDEX 1
> France
> tel.: 00-33-438 789262
> FAX:  00-33-438 785494
> e-mail: isa...@ib...
> www.ibs.fr
>=20
>=20
>=20
>=20
>=20
>=20