Re: [PyMOL] (no subject)

[gilleain t. <gil...@gm...>]

Hi,

I found out how to do ... something ... like this the other day.

From the "action" (A) menu for an object select Generate->Symmetry Mates.

This gives you the option of within 4-100 angstrom. I don't know what
it means to select different distances, all I know is that any one of
these options gives you lots more copies of that object, presumably
where they are in the crystal structure.

This came in useful when looking at the results from msdmotif at the
ebi, which was giving some ligands as binding twice to the same motif;
turns out that one of them was from a neighbour interaction.

gilleain

On 3/4/06, Blanton Tolbert <bla...@ur...> wrote:
> Hi pymol community
>
> I would like to recapitulate the crystal packing arrangement of a
> protein structure to look for neighbor interactions.  Is it possible
> to do this in pymol?  If so, please provide me some insight.
>
> Thanks,
>
>
> Blanton Tolbert
> Graduate Student
> University of Rochester
> Biophysics and Structural Biology
> 585-275-5189
> bla...@ur...
>
>
>
>
>
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