Re: [PyMOL] Sequence view print out

[Jerome P. <j.p...@pa...>]

Le Mardi 28 F=E9vrier 2006 21:10, Joel Tyndall a =E9crit=A0:
> Hi all,
>
> I'm not sure if this has been asked before and I'm not sure if its
> possible...but here goes anyway. Is there a way to print/export the
> sequences in the viewer window? It would be an easy way to translate
> actual secondary structure to a sequence alignment

In the control window, you can get a subsequence corresponding to a seconda=
ry=20
structure with :

stored.list =3D []
for i in range(a,b): cmd.iterate( "name ca and resi "+str(i),=20
"stored.list.append(resn)")

where a is the id number from the first amino acid in the secondary structu=
re=20
and b is (the id from the last amino acid +1) in the secondary structure.
The stored.list variable contains now all the amino acids in the secondary=
=20
structure. Then, you can use all the power of python to process this list a=
s=20
you want.

Don't hesitate to ask for more features,

Cheers,

Jerome Pansanel

> Thanks
>
> J