From: mynameis n. <pin...@ho...> - 2006-02-01 15:32:00
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For some reason I just can't get APBS to render an electrostatic surface for me. I have installed pymol 0.99 beta37 and APBS 4.0 on Windows XP Here are the steps I currently take: 1) I load my PDB molecule into Pymol 2) go to Plug-ins and click on APBS tools 3) click on APBS location and give locations for binary (installed in C:\program files\APBS) and psize.py (located in C:\program files\APBS\tools\manip) 4) click on set grid ---> output: Maximum number of grid points exceeded. Old grid dimensions were [129, 129, 129] Fine grid points rounded down from [107, 107, 107] New grid dimensions are [97, 97, 97] APBS Tools: coarse grid: (82.470,90.545,97.723) APBS Tools: fine grid: (68.512,73.262,77.484) APBS Tools: center: (29.733,20.940,40.031) APBS Tools: fine grid points (97,97,97) 5) click on Run APBS --> output: ObjectMapLoadDXFile-Error: Unable to open file! 6) click on Visualization tab and click update --> nothing happens. Can someone please tell me what I am doing wrong? Thank you so much for any assistance. _________________________________________________________________ On the road to retirement? Check out MSN Life Events for advice on how to get there! http://lifeevents.msn.com/category.aspx?cid=Retirement |