[PyMOL] EMizing an xray structure

[<an...@bi...>]

Hey all,

I'm trying to make a figure from a pdb that's supposed to look like an=20
EM structure.  According to an older post from Warren I should increase=20
solvent_radius and alter vdw.

For most combinations of the two, artefacts appear all over the place,=20
like missing surface and surface floating about.  I succeeded in making=20
a figure without artifacts (high vdw increase, minimal solvent_radius=20
increase), but it looks more like a lychee than a protein.

Has anyone found numbers that work well?  Or a different approach to=20
creating an EM reconstruction-like figure.

Merci bien.


Andreas



--=20
    -->       Andreas F=F6rster       <--
Institut de Biologie Structural, Grenoble
       www.biochem.utah.edu/~andreas