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RE: [PyMOL] Slowwwww ray
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From: Warren D. <wa...@de...> - 2005-11-21 19:29:55
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Michele,=20 Did you just migrate from an older version? We switched PyMOL over to perspective-based rendering (WYSIWYG with OpenGL) as the default at some point in the past year. You can still render orthoscopically if you'd prefer: load 1alk.pdb show surface set orthoscopic set hash_max=3D160 ray =3D>2.58 seconds on 2 X 2 Ghz opteron load 1alk.pdb show surface set hash_max=3D160 ray =3D>10.7 seconds on 2 x 2 Ghz opteron In other words, raytracing taking into account the perspective transformation can require almost 5X more time than orthoscopic rendering. FYI: on a quad-core G5 Quad 2.5 Ghz, the times are 1.78 seconds and 4.82 seconds respectively. Those Mac G5 Quads are PyMOL raytracing monsters! Cheers, Warren -- Warren L. DeLano, Ph.D. =20 Principal Scientist . DeLano Scientific LLC =20 . 400 Oyster Point Blvd., Suite 213 =20 . South San Francisco, CA 94080 USA =20 . Biz:(650)-872-0942 Tech:(650)-872-0834 =20 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:wa...@de... =20 =20 > -----Original Message----- > From: pym...@li...=20 > [mailto:pym...@li...] On Behalf Of=20 > Stuart Endo-Streeter > Sent: Monday, November 21, 2005 11:13 AM > To: pym...@li... > Subject: Re: [PyMOL] Slowwwww ray >=20 > Default view, white with black background (sticks): > Ray: total time: 15.68 sec. =3D 229.5 frames/hour. (15.68 sec. accum.) >=20 > Surface ray (white w/ black background): > Ray: total time: 32.67 sec. =3D 110.2 frames/hour. (48.35 sec. accum.) >=20 > About the times I've been seeing for equivalent work I've=20 > been doing. =20 > Different system but your times don't sound too different=20 > from what I've seen on our dual-G5 2.0 GHz with an older=20 > Radeon card. I'm running an Opteron 150 > (2.4GHz) with 1GB DDR400 ECC registered and an MSI FX5700 LE on FC4. >=20 > On Monday 21 November 2005 13:51, Michele Fuortes wrote: > > Hi, > > > > I have a 2GHz G5, 6GB RAM, running OS X 10.4.3 server. > > I started doing some modeling after about 6 months hiatus. > > I'm using MacPymol 0.99b29 (no flickering with this). > > But.... > > it's slower than molasses. I get: > > > > Ray: total time: 16.16 sec. =3D 222.8 frames/hour (32.15=20 > sec. accum.). > > > > This is simple white surface on white black background, nothing=20 > > changed from default. > > It a fairly small molecule, 600 resi, 5400 atoms. > > > > My card is the stock ATI Radeon 9800 Pro. > > Could it be I messed up something with OpenGL? > > > > Why is it so slooowwwww > > > > Thanks > > > > Michele > > > > PS: would anybody with a similar setup try 1ALK.pdb show surface in=20 > > white and tell my the time to ray? > > Mine is: > > > > Ray: total time: 25.45 sec. =3D 141.4 frames/hour (57.60 sec. = accum.). > > > > > > > > > > ------------------------------------------------------- > > This SF.Net email is sponsored by the JBoss Inc. Get=20 > Certified Today=20 > > Register for a JBoss Training Course. Free Certification=20 > Exam for All=20 > > Training Attendees Through End of 2005. For more info visit: > > http://ads.osdn.com/?ad_id=3D7628&alloc_id=3D16845&op=3Dclick > > _______________________________________________ > > PyMOL-users mailing list > > PyM...@li... > > https://lists.sourceforge.net/lists/listinfo/pymol-users >=20 > --=20 >=20 >=20 >=20 >=20 >=20 >=20 >=20 >=20 > ____________________________________ > Stuart Endo-Streeter > Structural Biology and Biophysics > Dept. Biochemistry > LSRC C266 > Duke University > 919-681-1668 > stu...@du... >=20 >=20 > ------------------------------------------------------- > This SF.Net email is sponsored by the JBoss Inc. Get=20 > Certified Today Register for a JBoss Training Course. Free=20 > Certification Exam for All Training Attendees Through End of=20 > 2005. For more info visit: > http://ads.osdn.com/?ad_id=3D7628&alloc_id=3D16845&op=3Dclick > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users >=20 >=20 >=20 >=20 |
