Re: [PyMOL] Superimpose

[Joel T. <joe...@ot...>]

Hi Michael,

I notiuced no-one has posted anything so here goes.

Start with
 align 1abc, 1target
which will superimpose 1abc onto 1target
then from here you can select the non homologous regions (using display 
sequence and highlight from here and colour to your hearts content. I'm 
sure there are other ways to do this but this is one way!

Cheers

J

Michael Morbious wrote:

>Hi everyone,
>I have two similar (closely related) multi-chain
>structures. I want to merge them and highlight the
>regions that do not superimpose. However, I do not
>know how to superimpose these two structures and how
>to select non-intersecting residues. 
>Any help will be appreciated.
>Thanks.  
>
>
>		
>__________________________________ 
>Yahoo! FareChase: Search multiple travel sites in one click.
>http://farechase.yahoo.com
>
>
>-------------------------------------------------------
>SF.Net email is sponsored by:
>Tame your development challenges with Apache's Geronimo App Server. Download
>it for free - -and be entered to win a 42" plasma tv or your very own
>Sony(tm)PSP.  Click here to play: http://sourceforge.net/geronimo.php
>_______________________________________________
>PyMOL-users mailing list
>PyM...@li...
>https://lists.sourceforge.net/lists/listinfo/pymol-users
>
>  
>

-- 
Joel Tyndall, PhD

Lecturer
National School of Pharmacy
University of Otago
PO Box 913 Dunedin
New Zealand                     

Pukenga
Te Kura Taiwhanga Putaiao
Te Whare Wananga o Otago
Pouaka Poutapeta 913 Otepoti
Aotearoa

Ph / Waea               +64 3 4797293 
Fax / Waeawhakaahua     +64 3 4797034