Re: [PyMOL] Viewing cavities?

[Peter A. M. <pa...@co...>]

Hi Marcus,

> The surface rendering in PyMOL is quite nice, but I cannot separate the
> "branches" of the surface.  That is, I would like to view a large cavity
> inside of a protein independently from the outer, solvent accessible
> surface.  Is anyone aware of a means to do this?

The easiest way I'm aware of is to select the residues involved on the
surface of your cavity, and then do show surface, [selection].

Pete

Pete Meyer
Fu Lab
BMCB grad student
Cornell University