Re: [PyMOL] very slow script for distance calculation

[andrea s. <and...@gm...>]

Gilleain Torrance wrote:

> Hi,
>
> I don't see how you can get rid of this loop actually.
>
> The thing that occurs to me is that you are loading structures, but  
> not deleting them!
>
> So, at the other end of the "for i in KeepStruc" loop, you should  
> have a "cmd.delete(i)".
>
> Other than that, you don't need to be opening the files "out" or  
> "full" inside the loop, or re-reading the data from "amb".
>
> Hth.
>
> gilleain torrance

cmd.delete() did the job very well (now it takes few mins...rather than 
7 hours..)
The other suggestions did improve, but not too much.

thanks a lot

andrea