Re: [PyMOL] Missing parts in cartoon mode

[<ran...@ic...>]

The two missing loops of the 1DAN structure when in cartoon mode are
located to res. 183-189 and 220-220. I=B4m using a standard PC with
Windows 2000.

Any suggestions? A fellow collegue in my lab is having identical
troubles but he=B4s also using a PC with win2000. Its quite frustrating
because the rest of the structure looks great in PyMol!

=20

Cheers Kasper

=20



<-----Original Message----->

 	  	 From: Joel Tyndall
Sent: 10/17/2005 12:07:00 AM
To: ran...@ic...
Subject: Re: [PyMOL] Missing parts in cartoon mode=20

Hey Kasper,=20

which loops can't you see (amino acid nos./chain/)? what OS are you on=20
(OSX, PC, Linux?) I have had a look and it looks ok on windows=20

Cheers=20

J=20

ran...@ic... wrote:=20

> Hi everybody=20
> I am getting quite desperate! For some strange reason PyMol do not=20
> display certain areas (several loops) of my .pdb file (1DAN) when in=20
> cartoon display mode. When I display the structure in "lines" or=20
> "sticks" everything is ok. Other pdb-viewers dont have this problem=20
> with the same .pdb file. I have tried several things:=20
> 1. Upgraded to the newest version og PyMol.=20
> 2. Redefined secondary structure using the "alter" command.=20
> 3. Imported the .pdb file into SwissViewer, saved as the imported=20
> structure as a .pdb file, and then imported into PyMOl.=20
>=20
> None of these things have solved the problem. Help please! (I would=20
> hate to have to start using another pdb-viewer!!) Cheers Kasper=20
>=20
> _______________________________________________________________=20
> ICQ - You get the message, anywhere!=20
> Get it @ http://www.icq.com=20
>=20
>=20
>=20

--=20
Joel Tyndall, PhD=20

Lecturer=20
National School of Pharmacy=20
University of Otago=20
PO Box 913 Dunedin=20
New Zealand=20

Pukenga=20
Te Kura Taiwhanga Putaiao=20
Te Whare Wananga o Otago=20
Pouaka Poutapeta 913 Otepoti=20
Aotearoa=20

Ph / Waea +64 3 4797293=20
Fax / Waeawhakaahua +64 3 4797034=20


.=20
=09


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