Re: [PyMOL] automated H-bond computation & visualization in pyMOL?

[Michael W. <we...@st...>]

Hi Warren,
thanks a lot for the quick & useful information concerning H-bond 
visualization.

All the best,
Michael.

----- Original Message ----- 
> On Monday 17 October 2005 22:16, Warren DeLano wrote:
>> Michael
>>
>> d/l a recent build http://delsci.com/beta
>>
>> and use the "find"->"polar contacts" option under the objects Action "A"
>> menu in the viewer window.
>>
>> Cheers,
>> Warren
>>
>>
>> --
>> Warren L. DeLano, Ph.D.
>> Principal Scientist
>>
>> . DeLano Scientific LLC
>> . 400 Oyster Point Blvd., Suite 213
>> . South San Francisco, CA 94080 USA
>> . Biz:(650)-872-0942  Tech:(650)-872-0834
>> . Fax:(650)-872-0273  Cell:(650)-346-1154
>> . mailto:wa...@de...
>>
>> > -----Original Message-----
>> > From: pym...@li...
>> > [mailto:pym...@li...] On Behalf Of
>> > Michael Weber
>> > Sent: Monday, October 17, 2005 5:03 AM
>> > To: pym...@li...
>> > Subject: [PyMOL] automated H-bond computation & visualization
>> > in pyMOL?
>> >
>> > Hello everybody,
>> > I am new to PyMOL and I have a short question: In pyMOL - is
>> > it possible to automatically compute and visualize H-bonds in
>> > .PDB files as it is e.g. possible in SWISS-PDB-VIEWER? Maybe
>> > there is a pyMOL script for this purpose? I need such a
>> > function for my work with catalytically active RNA molecules
>> > (e.g. PDB # 2A2E, 2A64, 1NBS, 1U9S). Would be nice if someone
>> > could help me with this problem...
>> >
>> > All the best & thanks in advance,
>> > Michael.