Re: [PyMOL] align selected regions

[jy-ucsd <ji...@uc...>]

Hi, all
I am trying to align two proteins, but I would like to specify different 
regions for different alignment, since the two proteins that I wish to 
align has a hinge region. 
I tried the fit command, as the following:
fit (protein1 and chain A and resi 200-300 and name ca), (protein 2 and 
chain B and resi 200-300 and name ca)

and it did not work, "no atoms selected".

can someone tell me the best way to do it?

Thank you

Jie