From: Warren D. <wa...@de...> - 2005-09-25 23:18:22
|
Yes, the create command provide you with this ability, though at the end of the process you end up with a new object. create new_object, old_object1 | old_object2 In some cases, new_object can be the same name as either old_object1 or old_object2: create old_object1, old_object1 | old_object2 Also note that the vertical bar (the "or" operator) is optional in recent betas, so create old_object1, old_object1 old_object2 becomes legal. Cheers, Warren -- Warren L. DeLano, Ph.D. =20 Principal Scientist . DeLano Scientific LLC =20 . 400 Oyster Point Blvd., Suite 213 =20 . South San Francisco, CA 94080 USA =20 . Biz:(650)-872-0942 Tech:(650)-872-0834 =20 . Fax:(650)-872-0273 Cell:(650)-346-1154 . mailto:wa...@de... =20 =20 > -----Original Message----- > From: pym...@li...=20 > [mailto:pym...@li...] On Behalf Of=20 > Joseph Fernandez > Sent: Sunday, September 25, 2005 11:19 AM > To: pym...@li... > Subject: [PyMOL] (no subject) >=20 > There is a very useful functionality in Sybyl, whereby the=20 > user can "merge" a residue from one molecular area, into=20 > another molecular area. The residue then becomes a part of=20 > the latter moleculear area, without deleting it. I wonder=20 > whether there is such a functionality in PyMol. =20 >=20 > As an example, I have created a new object, consisting of=20 > several residues that I have extracted from the active site=20 > of a protein (using the create command).=20 > I then deleted these residues from the original object=20 > (active site of protein). I now want to merge an additional=20 > residue from the active site into the ligand object, and=20 > delete the residue from the active site, but without deleting=20 > the ligand object. >=20 > Any assistance on this matter would be appreciated. >=20 > Joe >=20 >=20 > =09 > =09 > ______________________________________________________ > Yahoo! for Good > Donate to the Hurricane Katrina relief effort.=20 > http://store.yahoo.com/redcross-donate3/=20 >=20 >=20 >=20 > ------------------------------------------------------- > SF.Net email is sponsored by: > Tame your development challenges with Apache's Geronimo App Server.=20 > Download it for free - -and be entered to win a 42" plasma tv=20 > or your very own Sony(tm)PSP. Click here to play:=20 > http://sourceforge.net/geronimo.php > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users >=20 >=20 >=20 >=20 |