[PyMOL] "only rank-0 arrays can be converted to Python scalars"

[Shivender S. <sh...@ma...>]

hi,

while using kabsch.py by Jason Vertrees from the pymolwiki site (http://www=
.pymolwiki.org/index.php/Kabsch#The_Code)

i am getting the following error message:=20

Traceback (most recent call last):
  File "C:\Program Files\DeLano Scientific\PyMOL/modules\pymol\parser.py", =
line 191, in parse
    result=3Dapply(kw[nest][0],args[nest],kw_args[nest])
  File "kabsch.py", line 578, in optAlign
    U, T1, T2, RMSD, c1, c2 =3D K.align(stored.sel1, stored.sel2, [])
  File "kabsch.py", line 161, in align
    R =3D self.calcR(c1, c2)
  File "kabsch.py", line 254, in calcR
    R[i][j] =3D R[i][j] + (1 * (c2[k][i] * c1[k][j]) )
TypeError: only rank-0 arrays can be converted to Python scalars.

on contacting Jason and trying to backtrace the error source it appears tha=
t this error occurs=20
only on the Windows platform and the error message originates from within p=
ymol.exe and not=20
from anywhere within the Numeric package. i have tried different versions o=
f Numeric and pymol.

anyone have insight regarding this?=20=20
i am using pymol 0.99beta12 and Numeric 23.8 on Windows XP SP2.

thanks,
shiven


--=20
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