Subject: [PyMOL] display problem (slab?)

[Michelle G. <mic...@ya...>]

Hi Marc,

I think I've come across the same problem when looking at your molecule as =
a=20
cartoon, sphere, or surface.  It seems to be related to two transparency=20
settings within pymol.  Maybe it's a bug??

Search for my name on the list.  The only two replies I have ever posted=20
pertain to this.

Also, you  should post your hardware so that if this is a bug, it can more=
=20
easily be tracked down and squashed.

Cheers,
Michelle Gill
Graduate Student
Molecular Biophysics and Biochemistry
Yale University

Content-Type=3Dmessage/rfc822
Content-Description=3Dembedded message
=46rom: Marc Vogt <mv...@es...>
To: PyM...@li...
Date: Tue, 16 Aug 2005 17:52:48 -0400 (EDT)
Subject: [PyMOL] display problem (slab?)

Hi all

=46or some reason I am now having a strange problem when I use pymol
to display molecules. =A0It acts sort of like it is in slab mode where
some of the molecule fades into nothingness. =A0However, when I spin
the molecule, the same regions remain invisible. =A0If it were a true
slab effect, the regions that I spin into the slab would become visible
and the ones out would be invisible. =A0I wouldn't worry about it and would
just restart the program to eliminate the setting, but for some reason
it seems to now be a default and happens no matter what I do. =A0
I think I'm just missing something really silly, but I can't catch it.
Any ideas on how to restore normal function?


thanks,
Marc