RE: [PyMOL] torsion + movie

[Warren D. <wa...@de...>]

Try something like this:

# Save as a .pml file

load $PYMOL_PATH/test/dat/pept.pdb

for st in range(2,31): \
   cmd.create("pept","pept",st-1,st) \
   cmd.frame(st) \
   cmd.edit("4/cb","4/ca") \
   cmd.torsion(5)=20

edit

movie.sweep

rewind

mplay

Cheers,
Warren

--
Warren L. DeLano, Ph.D.                    =20
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> -----Original Message-----
> From: pym...@li...
> [mailto:pym...@li...] On Behalf Of Xavier=20
> Deupi
> Sent: Monday, August 15, 2005 11:38 AM
> To: pym...@li...
> Subject: [PyMOL] torsion + movie
>=20
> Hi,
>=20
> I'm trying to create a simple movie showing the rotation around a=20
> dihedral angle. I'm sure it's an extremely easy task, but I can't=20
> figure out the way of loading each state (i.e. conformation of the=20
> dihedral
> angle) into the movie object. I mean, the 'load' command (as in "load
> foo1.pdb,mov") expects a pdb file as an argument, but I want to load=20
> the current state as shown in PyMOL (after modifying the torsion=20
> angle, for instance).
> Any help?
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> Thanks in advance,
>=20
> Xavier
>=20
> --
> Xavier Deupi, Ph.D.
> Department of Molecular and Cellular Physiology Beckman Center for=20
> Molecular and Genetic Medicine (B161)
> 279 Campus Drive, Stanford University School of Medicine Stanford, CA=20
> 94305 (USA)
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> E-mail: Xav...@st...
> Phone: +1 (650) 725-6497
> Fax : +1 (650) 725-8021
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