From: <tan...@st...> - 2005-08-15 10:04:50
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Lari, the way you've described is a nice workaround for images and presentations, which I had in mind, too. But it is not applicable while I am working with PyMOL online and want to make my CGO's transparent to see what is in them (including ability to rotate and zomm in/out the scene (which is not very doable in static pictures ;-)). I'm familiar with scripting in PyMOL. Probably I can change any transparenc= y variable while creating my triangles, which result in my CGO's? Isn't there= a implemented command in PyMOL, which does what I need? Cheers, Yusuf -- Yusuf Tanrikulu Bioinformatics Diploma Student Department of Biosciences Johann-Wolfgang-Goethe Univerity Frankfurt Siesmayerstrasse 70 60326 Frankfurt am Main - Germany - tan...@bi... Quoting Lari Lehti=F6 <lar...@he...>: > Hi, > > I've done this by rendering two images (actually 4 to get stereo). > One without > the CGOs and one with them. Then I overlaid them with photoshop and > changed the > trasnparency of the CGO containing layer. I just used triangles and it lo= oked > rather nice. > > ~Lari~ > > _______________________________________ > Lari Lehti=F6 > University of Helsinki > Institute of Biotechnology > Macromolecular X-ray crystallography > P.O.Box 65 > 00014 HY > Finland > http://www.biocenter.helsinki.fi/~lehtio/ > _______________________________________ > > > Quoting tan...@st...: > > # Hi everybody, > # > # i've just created many CGOs, which show up solid surfaces like spheres = and > # ellipsoids. Is it possible to set the transparency of some CGO's to > i.e. 0.5 > # and leave the others solid? > # I've checked out the reference and the manual, and found something like= : > # > # set transparency=3D0.5, object > # > # But this actually does not work for CGO's. > # Any ideas.... > # > # Yusuf > # > # > # -- > # Yusuf Tanrikulu > # Bioinformatics Diploma Student > # Department of Biosciences > # Johann-Wolfgang-Goethe Univerity Frankfurt > # Siesmayerstrasse 70 > # 60326 Frankfurt am Main > # - Germany - > # tan...@bi... > # > # > # ------------------------------------------------------- > # SF.Net email is Sponsored by the Better Software Conference & EXPO > # September 19-22, 2005 * San Francisco, CA * Development Lifecycle Pract= ices > # Agile & Plan-Driven Development * Managing Projects & Teams * Testing &= QA > # Security * Process Improvement & Measurement * http://www.sqe.com/bsce5= sf > # _______________________________________________ > # PyMOL-users mailing list > # PyM...@li... > # https://lists.sourceforge.net/lists/listinfo/pymol-users > # > > > ------------------------------------------------------- > SF.Net email is Sponsored by the Better Software Conference & EXPO > September 19-22, 2005 * San Francisco, CA * Development Lifecycle Practic= es > Agile & Plan-Driven Development * Managing Projects & Teams * Testing & Q= A > Security * Process Improvement & Measurement * http://www.sqe.com/bsce5sf > _______________________________________________ > PyMOL-users mailing list > PyM...@li... > https://lists.sourceforge.net/lists/listinfo/pymol-users > |