RE: [PyMOL] conformational states in the mutagenesis wizard

[Warren D. <wa...@de...>]

Xavier,

PyMOL 0.99beta09 and earlier use a crude backbone-independent rotamer
library.

However, current development versions (PyMOL 0.99beta10 on up) now
provide both the Dunbrack backbone-dependent and backbone-independent
rotamers.

Cheers,
Warren

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Warren L. DeLano, Ph.D.                    =20
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> -----Original Message-----
> From: pym...@li...=20
> [mailto:pym...@li...] On Behalf Of=20
> Xavier Deupi
> Sent: Friday, August 12, 2005 2:34 PM
> To: pym...@li...
> Subject: [PyMOL] conformational states in the mutagenesis wizard
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> Hi,
>=20
> I've just realized that through the mutagenesis wizard you=20
> can view/select different conformations for a sidechain. I've=20
> been playing around, and it seems that the conformations are=20
> selected according to a backbone-independent rotamer library.=20
> Am I correct? Which library has been used?
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> I would also like to know if there is anybody out there using=20
> the rotamer toggle plugin. I've just installed it, and=20
> although it seems extremely useful, it makes PyMOL very slow=20
> to start. I'm running PyMOL
> 0.98 for MacOSX in a PowerBook G4 1GHz with 1Gb of RAM=20
> (running MacOS X
> 10.4.2)
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> Thanks in advance,
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> Xavier
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> --
> Xavier Deupi, Ph.D.
> Department of Molecular and Cellular Physiology Beckman=20
> Center for Molecular and Genetic Medicine (B161)
> 279 Campus Drive, Stanford University School of Medicine=20
> Stanford, CA 94305 (USA)
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> E-mail: Xav...@st...
> Phone: +1 (650) 725-6497
> Fax : +1 (650) 725-8021
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