RE: [PyMOL] Creating PDB files from Primary Sequence

[Warren D. <wa...@de...>]

James,

> PyMol would allow one to enter a peptide sequence (generally short in
> length) to create a template structure that can then be used=20

Just hold down ALT/OPTION and type in the peptide sequence.  The
numbering will be arbitrary, but at least you'll have something to work
with.

From a script, you can hack this as follows:

for aa in "DCAHWLGELVWCT": cmd._alt(string.lower(aa))

Cheers,
Warren


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> -----Original Message-----
> From: pym...@li...=20
> [mailto:pym...@li...] On Behalf Of=20
> James R. Graham
> Sent: Wednesday, August 10, 2005 4:36 PM
> To: pym...@li...
> Subject: [PyMOL] Creating PDB files from Primary Sequence
>=20
> Hello,
>=20
> This may be slightly off-topic, but I was wondering whether=20
> PyMol would allow one to enter a peptide sequence (generally short in
> length) to create a template structure that can then be used=20
> for structural refinements (minimizations, etc.) elsewhere.
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> If PyMol cannot do this, is anyone aware of any program=20
> (preferably Mac OS X or linux compatible) that would be able=20
> to do this?
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> Any info would be greatly appreciated.
>=20
> And apologies if this question is too far off-topic.
>=20
> Regards,
> james
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