Re: [PyMOL] loop/coil thickness

[Cameron M. <cm...@uc...>]

Marc,

If the pair of images at the bottom of 
"http://mccammon.ucsd.edu/~cmura/PyMOL/Sandbox/#variableloops" is what 
you'd like to do, then modify the "cartoon_loop_radius"... The default 
for this setting is 0.2, so typing "set cartoon_loop_radius, 0.4" should 
achieve the desired effect by doubling it (in order to successfully 
apply this setting to just a particular subset of atoms, you'd need to 
create a new object out of that selection of atoms -- see the "create" 
command in the manual). The sample PyMOL macro and PDB file that 
produced that pair of images are also on the website.

Good luck,
Cameron


=== Marc Vogt wrote (on 07/27/2005 01:16 PM): ===

>Hello all
>
>I want to increase loop/coil thickness while preserving the standard
>cartoon for alpha and beta regions.  I like the thickness that is a result
>of "cartoon tube, all", but it removes the regular cartoon depictions in
>the helical and beta regions.  Any ideas?
>
>thanks,
>
>Marc
>
>
>
>
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-- 
Cameron Mura
UCSD