Hello PyMol users,

I have a lot of pdb files open and I've superposed them to compare the pockets. Now I would like to see the hydrogen bonds formed by each ligand to the protein its been crystalised with. I would ideally like an object which shows hydrogen bonds between the ligand(s) present (I use organic to identify them since the naming is different in each pdb) and the protein of the enabled object. So far I keep getting an object showing all the hydrogen bonds in all the pdbs at once. Given the number of pdbs I'm comparing creating hydrogen bond objects for each of them would be cumbersome.

Thank you,