Good afternoon,


I'm using PyMOL 1.3 and I would like to select one specific part of the molecule based on a peptide sequence that it is presented in protein. Is there any way to select subsequences in PyMOL?


A fictitious example:


Protein sequence:






I know that I can search manually this peptide in the sequence using the PyMOL. However, for huge protein, it takes a lot of time. Is there any automated routine to do this?


Thank you in advance.



Júlio César da Silva
Brazilian Bioscience Laboratory

Campinas, SP - Brazil
+ 55 (19) 3512-1116 (novo e-mail: favor atualizar o seu cadastro)

Bradley J. Hintze
Graduate Student
Duke University
School of Medicine