Hi Martin,

It should be RMSD indeed. Mind that the final RMSD from align is obtained after optimizing the fit by leaving out outliers.



On Nov 29, 2011 10:07 AM, "Martin Hediger" <ma.hed@bluewin.ch> wrote:

Is the RMS the same as RMSD? PyMOL writes "RMS" when using align.

Am 11.11.11 14:59, schrieb Thomas Holder:

> Hi Martin, > > is it the transform=0 argument what you are looking for? > > http://pymolwiki.org/i...

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