Dear Pymol Users!

I wounder whether it will be possible  to save big ensemble of the loaded into pymol Pdb's files as the trajectory output (like dcd format) what are actually can be performed by vmd (e.g by means of http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/animatepdbs/). The problem in last case is that I don't know how to perform superimposition of my conformers agains refeence frame (alternatively what is easily performed in pymol). I'll be thankful for any suggestions.

Best wishes,

James