Hi Marius,

I just installed pmw, but pymol wasn't change with or without .pymolrc. Is pmw fundamental component during compiling pymol? I didn't notice any warning, nor err was prompted, PyMol compiled just fine, the problem was at runtime.

On Wed, Oct 10, 2012 at 9:52 AM, Marius Retegan <marius.s.retegan@gmail.com> wrote:
Hi Ivan,

Did you install PMW (http://pmw.sourceforge.net/)?
You might also want to try running PyMOL with an empty .pymolrc file.

Cheers,
Marius

On Wed, Oct 10, 2012 at 5:13 AM, Ivan Pavicevic <ivanp84@gmail.com> wrote:
> Dear Jason,
>
> After editing ~/.pymolrc and running pymol again, the problem still persists
> with message: " Detected OpenGL version 2.0 or greater.  Shaders available."
> Also, I'm a bit confused about .pymolrc from the link
> (http://www.pymolwiki.org/index.php/Pymolrc), is there really load_sep.py
> script, or it's just an example of how to launch a script during runtime? (I
> removed that line from rc)
>
>
> On Wed, Oct 10, 2012 at 12:16 AM, Jason Vertrees
> <jason.vertrees@schrodinger.com> wrote:
>>
>> Ivan,
>>
>> Try putting this in your ~/.pymolrc file
>> (http://www.pymolwiki.org/index.php/Pymolrc):
>>
>> set use_shaders, 0
>> set sphere_mode, 0
>>
>> and re-start PyMOL.
>>
>> Cheers,
>>
>> -- Jason
>>
>>
>> On Tue, Oct 9, 2012 at 3:54 PM, Ivan Pavicevic <ivanp84@gmail.com> wrote:
>> > Hi Jason,
>> >
>> > I followed compiling instructions from
>> > http://www.pymolwiki.org/index.php/Linux_Install
>> > Actually, first attempts were with instructions from INSTALL (setup.py
>> > build
>> > install ...) and faced same problem.
>> > This machine is Lenovo G550 notebook with poor "Intel Graphics Media
>> > Accelerator 4500MHD" graphics, but I successfully had used PyMol on
>> > OpenSUSE.
>> > Cheers,
>> > Ivan
>> >
>> >
>> > On Tue, Oct 9, 2012 at 3:37 PM, Jason Vertrees
>> > <jason.vertrees@schrodinger.com> wrote:
>> >>
>> >> Hi Ivan,
>> >>
>> >> How did you install PyMOL? What commands did you use?
>> >>
>> >> Also, what video card is in your computer?
>> >>
>> >> Cheers,
>> >>
>> >> -- Jason
>> >>
>> >> On Mon, Oct 8, 2012 at 8:07 PM, Ivan Pavicevic <ivanp84@gmail.com>
>> >> wrote:
>> >> > Dear PyMol users,
>> >> >
>> >> > I'm facing very unusual runtime problem. After successful compiling
>> >> > of
>> >> > PyMol
>> >> > 1.5.0.1 on Slackware64 13.37 (actually, this system is S64-current
>> >> > from
>> >> > February), and running pymol, program prompting several lines, and
>> >> > then
>> >> > goes
>> >> > in some sort of freeze state.
>> >> >
>> >> > The output is:
>> >> >
>> >> > bash-4.1$ /opt/pymol-svn/pymol
>> >> >  PyMOL(TM) Molecular Graphics System, Version 1.5.0.1.
>> >> >  Copyright (c) Schrodinger, LLC.
>> >> >  All Rights Reserved.
>> >> >
>> >> >     Created by Warren L. DeLano, Ph.D.
>> >> >
>> >> >     PyMOL is user-supported open-source software.  Although some
>> >> > versions
>> >> >     are freely available, PyMOL is not in the public domain.
>> >> >
>> >> >     If PyMOL is helpful in your work or study, then please volunteer
>> >> >     support for our ongoing efforts to create open and affordable
>> >> > scientific
>> >> >     software by purchasing a PyMOL Maintenance and/or Support
>> >> > subscription.
>> >> >
>> >> >     More information can be found at "http://www.pymol.org".
>> >> >
>> >> >     Enter "help" for a list of commands.
>> >> >     Enter "help <command-name>" for information on a specific
>> >> > command.
>> >> >
>> >> >  Hit ESC anytime to toggle between text and graphics.
>> >> >
>> >> >  Detected OpenGL version 2.0 or greater.  Shaders available.
>> >> >
>> >> > Program hasn't any graphical, or further console prompt, and Ctrl+C
>> >> > can't
>> >> > terminate the app, the only way is with kill from another virtual
>> >> > console...
>> >> > That's it :(
>> >> > I hope someone knows what's the cause.
>> >> > --
>> >> > If you don't care where you are, then you ain't lost
>> >> >
>> >> >
>> >> >
>> >> >
>> >> > ------------------------------------------------------------------------------
>> >> > Don't let slow site performance ruin your business. Deploy New Relic
>> >> > APM
>> >> > Deploy New Relic app performance management and know exactly
>> >> > what is happening inside your Ruby, Python, PHP, Java, and .NET app
>> >> > Try New Relic at no cost today and get our sweet Data Nerd shirt too!
>> >> > http://p.sf.net/sfu/newrelic-dev2dev
>> >> > _______________________________________________
>> >> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
>> >> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
>> >> > Archives:
>> >> > http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>> >>
>> >>
>> >>
>> >> --
>> >> Jason Vertrees, PhD
>> >> PyMOL Product Manager
>> >> Schrödinger, Inc.
>> >>
>> >> (e) Jason.Vertrees@schrodinger.com
>> >> (o) +1 (603) 374-7120
>> >
>> >
>> >
>> >
>> > --
>> > If you don't care where you are, then you ain't lost
>> >
>>
>>
>>
>> --
>> Jason Vertrees, PhD
>> PyMOL Product Manager
>> Schrödinger, Inc.
>>
>> (e) Jason.Vertrees@schrodinger.com
>> (o) +1 (603) 374-7120
>
>
>
>
> --
> If you don't care where you are, then you ain't lost
>
>
> ------------------------------------------------------------------------------
> Don't let slow site performance ruin your business. Deploy New Relic APM
> Deploy New Relic app performance management and know exactly
> what is happening inside your Ruby, Python, PHP, Java, and .NET app
> Try New Relic at no cost today and get our sweet Data Nerd shirt too!
> http://p.sf.net/sfu/newrelic-dev2dev
> _______________________________________________
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net



--
If you don't care where you are, then you ain't lost