Dear Jason,

After editing ~/.pymolrc and running pymol again, the problem still persists with message: " Detected OpenGL version 2.0 or greater.  Shaders available."
Also, I'm a bit confused about .pymolrc from the link (http://www.pymolwiki.org/index.php/Pymolrc), is there really load_sep.py script, or it's just an example of how to launch a script during runtime? (I removed that line from rc)


On Wed, Oct 10, 2012 at 12:16 AM, Jason Vertrees <jason.vertrees@schrodinger.com> wrote:
Ivan,

Try putting this in your ~/.pymolrc file
(http://www.pymolwiki.org/index.php/Pymolrc):

set use_shaders, 0
set sphere_mode, 0

and re-start PyMOL.

Cheers,

-- Jason

On Tue, Oct 9, 2012 at 3:54 PM, Ivan Pavicevic <ivanp84@gmail.com> wrote:
> Hi Jason,
>
> I followed compiling instructions from
> http://www.pymolwiki.org/index.php/Linux_Install
> Actually, first attempts were with instructions from INSTALL (setup.py build
> install ...) and faced same problem.
> This machine is Lenovo G550 notebook with poor "Intel Graphics Media
> Accelerator 4500MHD" graphics, but I successfully had used PyMol on
> OpenSUSE.
> Cheers,
> Ivan
>
>
> On Tue, Oct 9, 2012 at 3:37 PM, Jason Vertrees
> <jason.vertrees@schrodinger.com> wrote:
>>
>> Hi Ivan,
>>
>> How did you install PyMOL? What commands did you use?
>>
>> Also, what video card is in your computer?
>>
>> Cheers,
>>
>> -- Jason
>>
>> On Mon, Oct 8, 2012 at 8:07 PM, Ivan Pavicevic <ivanp84@gmail.com> wrote:
>> > Dear PyMol users,
>> >
>> > I'm facing very unusual runtime problem. After successful compiling of
>> > PyMol
>> > 1.5.0.1 on Slackware64 13.37 (actually, this system is S64-current from
>> > February), and running pymol, program prompting several lines, and then
>> > goes
>> > in some sort of freeze state.
>> >
>> > The output is:
>> >
>> > bash-4.1$ /opt/pymol-svn/pymol
>> >  PyMOL(TM) Molecular Graphics System, Version 1.5.0.1.
>> >  Copyright (c) Schrodinger, LLC.
>> >  All Rights Reserved.
>> >
>> >     Created by Warren L. DeLano, Ph.D.
>> >
>> >     PyMOL is user-supported open-source software.  Although some
>> > versions
>> >     are freely available, PyMOL is not in the public domain.
>> >
>> >     If PyMOL is helpful in your work or study, then please volunteer
>> >     support for our ongoing efforts to create open and affordable
>> > scientific
>> >     software by purchasing a PyMOL Maintenance and/or Support
>> > subscription.
>> >
>> >     More information can be found at "http://www.pymol.org".
>> >
>> >     Enter "help" for a list of commands.
>> >     Enter "help <command-name>" for information on a specific command.
>> >
>> >  Hit ESC anytime to toggle between text and graphics.
>> >
>> >  Detected OpenGL version 2.0 or greater.  Shaders available.
>> >
>> > Program hasn't any graphical, or further console prompt, and Ctrl+C
>> > can't
>> > terminate the app, the only way is with kill from another virtual
>> > console...
>> > That's it :(
>> > I hope someone knows what's the cause.
>> > --
>> > If you don't care where you are, then you ain't lost
>> >
>> >
>> >
>> > ------------------------------------------------------------------------------
>> > Don't let slow site performance ruin your business. Deploy New Relic APM
>> > Deploy New Relic app performance management and know exactly
>> > what is happening inside your Ruby, Python, PHP, Java, and .NET app
>> > Try New Relic at no cost today and get our sweet Data Nerd shirt too!
>> > http://p.sf.net/sfu/newrelic-dev2dev
>> > _______________________________________________
>> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
>> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
>> > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>>
>>
>>
>> --
>> Jason Vertrees, PhD
>> PyMOL Product Manager
>> Schrödinger, Inc.
>>
>> (e) Jason.Vertrees@schrodinger.com
>> (o) +1 (603) 374-7120
>
>
>
>
> --
> If you don't care where you are, then you ain't lost
>



--
Jason Vertrees, PhD
PyMOL Product Manager
Schrödinger, Inc.

(e) Jason.Vertrees@schrodinger.com
(o) +1 (603) 374-7120



--
If you don't care where you are, then you ain't lost