If none suggests a solution in PyMOL ten use sscache.tcl script in VMD to update the SS at every frame.

Thomas

On 24 April 2013 17:31, Jianghai Zhu <jzhu@idi.harvard.edu> wrote:
Hi,

I have a trajectory file, in which two short helices would merge into one long helix.  However, when I play the trajectory in Pymol as cartoon, the long helix would still be shown as two helices with a loop in between.  Is there a way to force Pymol to show a long helix for a specific range of frames in a trajectory? Thanks a lot.

--Jianghai


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--

======================================================================

Thomas Evangelidis

PhD student

University of Athens
Faculty of Pharmacy
Department of Pharmaceutical Chemistry
Panepistimioupoli-Zografou
157 71 Athens
GREECE

email: tevang@pharm.uoa.gr

          tevang3@gmail.com


website: https://sites.google.com/site/thomasevangelidishomepage/